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  1. Developmental Biology as a Science of Dependent Co-Origination.Scott Gilbert - manuscript
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  2. Civilizational Structure of Regional Integration Organizations.Sergii Sardak & Y. Prysiazhniuk S. Sardak, S. Radziyevska - 2019 - Przegląd Strategiczny 12:59-79.
    The paper advances a new comprehensive complex approach to the investigation of the civilizational aspects in the development of regional associations of countries. The research starts with the overview of historical dimensions of the civilizational approach and the contribution of the founding scholars to its development. It continues with the analysis of the scientific and methodological input of the followers and the critics of this approach. The authors suggest their theoretical approach to the identification of the modern local civilizations according (...)
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  3. Beeing & Time: Kiss of Chemoreception & the Bug in Dasein's Mouth.Virgil W. Brower - 2014 - In Laurence Talairach-Vielmas & Marie Bouchet (eds.), Insects in Literature & the Arts. Brussels, Belgium: pp. 197-217.
    "Brower explores the way philosophers were inspired by entomological social systems and communication to reflect on human psyche, social behavior, community organization, communication, and inter-individual relationships. His essay rehearses the swarms of insects embedded in contemporary philosophy and literary theory, not only showing how many of the major concepts (or philosophemes) in continental philosophy – sexuality, politics, thinking, time, interdependence, and language – draw lessons from the world of insects, but also illustrating again how the insect world spurred human reflection.".
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  4. Sechzehn Tage: Wann Beginnt Ein Menschliches Leben?Barry Smith & Berit Brogaard - 2006 - In Guido Imaguire & Christine Schneider (eds.), Untersuchungen zur Ontologie. Munich: Philosophia. pp. 3-40.
    Der Abschluß der Gastrulation, der gleichzeitig auch den Anfang der Neurulation bedeutet, ist die zeitliche Grenze, die Beginn eines menschlichen Individuums markiert. Oft wird behauptet, daß jegliche natürliche Veränderung stetig ist. Wie ist es dann aber möglich, eine zeitliche Grenze auszuzeichnen, an der ein menschliches Lebewesen zu existieren beginnt? Man beachte, was geschieht, wenn wir vom Thema zeitlicher Unstetigkeit zum räumlichen übergehen. Lebewesen haben räumliche Grenzen (wie sie durch ihre Haut geformt wird). Die letzteren sind genuine Diskontinuitäten, auch angesichts der (...)
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  5. Ontologie des Embryos: Wann Beginnt Menschliches Leben.Barry Smith & Berit Brogaard - 2007 - In L. Honnefelder & M. C. Schmidt (eds.), Naturalismus als Paradigma - Wie weit reicht die naturwissenschaftliche Erklärung des Menschen? , 2007,. Berlin: Berlin University Press. pp. 196-204.
    Der Abschluß der Gastrulation, der gleichzeitig auch den Anfang der Neurulation bedeutet, ist die zeitliche Grenze, die Beginn eines menschlichen Individuums markiert. Oft wird behauptet, daß jegliche natürliche Veränderung stetig ist. Wie ist es dann aber möglich, eine zeitliche Grenze auszuzeichnen, an der ein menschliches Lebewesen zu existieren beginnt? Man beachte, was geschieht, wenn wir vom Thema zeitlicher Unstetigkeit zum räumlichen übergehen. Lebewesen haben räumliche Grenzen (wie sie durch ihre Haut geformt wird). Die letzteren sind genuine Diskontinuitäten, auch angesichts der (...)
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  6. The Cell and Protoplasm as Container, Object, and Substance, 1835–1861.Daniel Liu - 2017 - Journal of the History of Biology 50 (4):889-925.
    (Recipient of the 2020 Everett Mendelsohn Prize.) This article revisits the development of the protoplasm concept as it originally arose from critiques of the cell theory, and examines how the term “protoplasm” transformed from a botanical term of art in the 1840s to the so-called “living substance” and “the physical basis of life” two decades later. I show that there were two major shifts in biological materialism that needed to occur before protoplasm theory could be elevated to have equal status (...)
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  7. Symmetry-Breaking Dynamics in Development.Noah Moss Brender - 2017 - Phenomenology and the Cognitive Sciences 16 (4):585-596.
    Recognition of the plasticity of development — from gene expression to neuroplasticity — is increasingly undermining the traditional distinction between structure and function, or anatomy and behavior. At the same time, dynamic systems theory — a set of tools and concepts drawn from the physical sciences — has emerged as a way of describing what Maurice Merleau-Ponty calls the “dynamic anatomy” of the living organism. This article surveys and synthesizes dynamic systems models of development from biology, neuroscience, and psychology in (...)
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  8. Toolbox Murders: Putting Genes in Their Epigenetic and Ecological Contexts: P. Griffiths and K. Stotz: Genetics and Philosophy: An Introduction. [REVIEW]Thomas Pradeu - 2016 - Biology and Philosophy 31 (1):125-142.
    Griffiths and Stotz’s Genetics and Philosophy: An Introduction offers a very good overview of scientific and philosophical issues raised by present-day genetics. Examining, in particular, the questions of how a “gene” should be defined and what a gene does from a causal point of view, the authors explore the different domains of the life sciences in which genetics has come to play a decisive role, from Mendelian genetics to molecular genetics, behavioural genetics, and evolution. In this review, I highlight what (...)
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  9. The Embryo in Ancient Rabbinic Literature: Between Religious Law and Didactic Narratives: An Interpretive Essay.Etienne Lepicard - 2010 - History and Philosophy of the Life Sciences 32 (1):21-41.
    At a time when bioethical issues are at the top of public and political agendas, there is a renewed interest in representations of the embryo in various religious traditions. One of the major traditions that have contributed to Western representations of the embryo is the Jewish tradition. This tradition poses some difficulties that may deter scholars, but also presents some invaluable advantages. These derive from two components, the search for limits and narrativity, both of which are directly connected with the (...)
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  10. The Individual in Biology and Psychology.Robert A. Wilson - 1999 - In V. Harcastle (ed.), Where Biology Meets Psychology. pp. 355--374.
    Individual organisms are obvious enough kinds of things to have been taken for granted as the entities that have many commonly attributed biological and psychological properties, both in common sense and in science. The sorts of morphological properties used by the folk to categorize individual animals and plants into common sense kinds (that's a dog; that's a rose), as well as the properties that feature as parts of phenotypes, are properties of individual organisms. And psychological properties, such as believing that (...)
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  11. Some Problems for Alternative Individualism.Robert A. Wilson - 2000 - Philosophy of Science 67 (4):671-679.
    This paper points to some problems for the position that D.M. Walsh calls "alternative individualism," and argues that in defending this view Walsh has omitted an important part of what separates individualists and externalists in psychology. Walsh's example of Hox gene complexes is discussed in detail to show why some sort of externalism about scientific taxonomy more generally is a more plausible view than any extant version of individualism.
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Developmental Constraints
  1. Being Precise About Precision and One-to-One Specificity.Pierrick Bourrat - manuscript
    Following from my criticisms of Calcott’s analysis on the permissive/instructive distinction, I rebut his claims that 1) he clarifies my measure one-to-one specificity; 2) for all intents and purposes of his analysis his notion of precision is different from my measure of one- to-one specificity; 3) Waddington box is a better and different model than the extension of Woodward’s radio I propose.
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  2. Dispositional Properties in Evo-Devo.Christopher J. Austin & Laura Nuño de la Rosa - 2018 - In Laura Nuño de la Rosa & G. Müller (eds.), Evolutionary Developmental Biology. Cham, Switzerland: Springer.
    In identifying intrinsic molecular chance and extrinsic adaptive pressures as the only causally relevant factors in the process of evolution, the theoretical perspective of the Modern Synthesis had a major impact on the perceived tenability of an ontology of dispositional properties. However, since the late 1970s, an increasing number of evolutionary biologists have challenged the descriptive and explanatory adequacy of this “chance alone, extrinsic only” understanding of evolutionary change. Because morphological studies of homology, convergence, and teratology have revealed a space (...)
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  3. Towards a Morphogenetic Perspective on Cancer.Armando Aranda-Anzaldo - 2002 - Rivista di Biologia/Biology Forum 95:35-62.
    The purpose of this paper is to present a critique of the current view that reduces cancer to a cellular problem caused by specific gene mutations and to propose, instead, that such a problem might become more intelligible, if it is understood as a phenomenon that results from the breakdown of the morphological plan or Gestalt of the organism. Such and organism, in Aristotelian terms, is characterized for presenting a specific morphe or logos (form) and for having a telos (end) (...)
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  4. EvoDevo: die molekulare Entwicklungsbiologie als Schlüssel zum Verständnis der Evolutionstheorie.Paul Gottlob Layer - 2009 - Zeitschrift Für Pädagogik Und Theologie 61 (4):322-333.
    Darwin´s Erkenntnis über die Abstammung der Arten durch Mutation und Selektion sind in aller Munde, dass aber darüber im Detail noch viel Unklarheit herrscht, ist weniger bekannt. Es sind Fortschritte der Entwicklungsbiologie, die erst seit wenigen Jahren uns molekulare Erklärungsmuster an die Hand geben, mit denen die Entstehung neuer Arten besser verständlich wird. Es handelt sich um die Aufklärung der Wirkungsweise von Genen und ihren molekularen Produkten, die während der embryonalen Entwicklung von Tier und Mensch dafür sorgen, daß der Organismus (...)
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  5. Was ist Leben? - Von Zellen und anderen Lebewesen zwischen Genkonstanz und Umweltvarianz.Paul Gottlob Layer - 2007 - Arnoldshainer Texte - Der Etwas Andere Blick Auf Die Schöpfung 136:102-116.
    Bei der Suche nach dem rätselhaften Ursprung des Phänomens „Leben“ wird hier zunächst die zelluläre Ebene betrachtet. Im Grundaufbau zeigen alle Zellen viel Konstantes, aber gleichzeitig stellt jede Zelle ein einmaliges Individuum dar. Leben von Zellen gibt es nur als gegenseitiges Wechselspiel mit ihrer jeweiligen Umwelt. Das Genom (die Gesamtheit aller Gene) bleibt ab der Befruchtung in jeder Zelle eines Individuums konstant. Aber auch die Verwirklichung der Gene braucht eine „molekulare Umwelt“, besonders die vom Muttertier vorbereitete Umwelt im Zytoplasma des (...)
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  6. Eine neue Sicht der Evolution: Ist es nur der Zufall, der sie leitet?Paul Gottlob Layer - 2016 - BRIEFE Zur Orientierung Im Konflikt Mensch - Erde, Evangelische Akademie Sachsen-Anhalt E.V 121 (4):16-24.
    Nach neodarwinistischem Verständnis der Evolution entstehen neue Organismen letztlich durch rein zufällige Mutationsprozesse auf genetischer Ebene. Ihre Überlebenschancen werden dann durch die jeweilig herrschende Umwelt begünstigt oder unterdrückt. Die Evolution ist demnach nur vom reinen Zufall geleitet. Neuere Einsichten aus Entwicklungsbiologie (EvoDevo) und Epigenetik haben unsere Sicht der Evolutionsabläufe jedoch deutlich erweitert. Dabei kommt der Umwelt eine lenkende Rolle zu, der reine Zufall verliert an Bedeutung. Damit lässt sich naturwissenschaftliches Verständnis wieder besser mit herkömmlichen Schöpfungsbildern versöhnen.
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  7. Finding the Way in Phenotypic Space: The Origin and Maintenance of Constraints on Organismal Form.Massimo Pigliucci - 2007 - Annals of Botany 100:433-438.
    Background: One of the all-time questions in evolutionary biology regards the evolution of organismal shapes, and in particular why certain forms appear repeatedly in the history of life, others only seldom and still others not at all. Recent research in this field has deployed the conceptual framework of constraints and natural selection as measured by quantitative genetic methods. Scope: In this paper I argue that quantitative genetics can by necessity only provide us with useful statistical sum- maries that may lead (...)
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  8. Space: Negative Selection, Physical Constraint and Symmetry.Marvin E. Kirsh - manuscript
    A descriptive role is suggested for uracil as a temporal divide in the immediate aspects of metabolism verses long term maintained genetic transmission. In particular, details of the mechanism of excision repair of uracil from DNA based on differential parameters of spatial distortion of the planar uracil molecule within the DNA helix verses RNA, when viewed in analogy to a proposed model for space involving the substitution of the act of mirroring for the element of time in processes and a (...)
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Developmental Modularity
  1. Dispositional Properties in Evo-Devo.Christopher J. Austin & Laura Nuño de la Rosa - 2018 - In Laura Nuño de la Rosa & G. Müller (eds.), Evolutionary Developmental Biology. Cham, Switzerland: Springer.
    In identifying intrinsic molecular chance and extrinsic adaptive pressures as the only causally relevant factors in the process of evolution, the theoretical perspective of the Modern Synthesis had a major impact on the perceived tenability of an ontology of dispositional properties. However, since the late 1970s, an increasing number of evolutionary biologists have challenged the descriptive and explanatory adequacy of this “chance alone, extrinsic only” understanding of evolutionary change. Because morphological studies of homology, convergence, and teratology have revealed a space (...)
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  2. Eine neue Sicht der Evolution: Ist es nur der Zufall, der sie leitet?Paul Gottlob Layer - 2016 - BRIEFE Zur Orientierung Im Konflikt Mensch - Erde, Evangelische Akademie Sachsen-Anhalt E.V 121 (4):16-24.
    Nach neodarwinistischem Verständnis der Evolution entstehen neue Organismen letztlich durch rein zufällige Mutationsprozesse auf genetischer Ebene. Ihre Überlebenschancen werden dann durch die jeweilig herrschende Umwelt begünstigt oder unterdrückt. Die Evolution ist demnach nur vom reinen Zufall geleitet. Neuere Einsichten aus Entwicklungsbiologie (EvoDevo) und Epigenetik haben unsere Sicht der Evolutionsabläufe jedoch deutlich erweitert. Dabei kommt der Umwelt eine lenkende Rolle zu, der reine Zufall verliert an Bedeutung. Damit lässt sich naturwissenschaftliches Verständnis wieder besser mit herkömmlichen Schöpfungsbildern versöhnen.
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  3. The Proximate–Ultimate Distinction and Evolutionary Developmental Biology: Causal Irrelevance Versus Explanatory Abstraction.Massimo Pigliucci & Raphael Scholl - 2015 - Biology and Philosophy 30 (5):653-670.
    Mayr’s proximate–ultimate distinction has received renewed interest in recent years. Here we discuss its role in arguments about the relevance of developmental to evolutionary biology. We show that two recent critiques of the proximate–ultimate distinction fail to explain why developmental processes in particular should be of interest to evolutionary biologists. We trace these failures to a common problem: both critiques take the proximate–ultimate distinction to neglect specific causal interactions in nature. We argue that this is implausible, and that the distinction (...)
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  4. The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  5. Between Holism and Reductionism: A Philosophical Primer on Emergence.Massimo Pigliucci - 2013 - Biological Journal of the Linnean Society 112 (2):261-267.
    Ever since Darwin a great deal of the conceptual history of biology may be read as a struggle between two philosophical positions: reductionism and holism. On the one hand, we have the reductionist claim that evolution has to be understood in terms of changes at the fundamental causal level of the gene. As Richard Dawkins famously put it, organisms are just ‘lumbering robots’ in the service of their genetic masters. On the other hand, there is a long holistic tradition that (...)
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  6. August Weismann on Germ-Plasm Variation.Rasmus Grønfeldt Winther - 2001 - Journal of the History of Biology 34 (3):517-555.
    August Weismann is famous for having argued against the inheritance of acquired characters. However, an analysis of his work indicates that Weismann always held that changes in external conditions, acting during development, were the necessary causes of variation in the hereditary material. For much of his career he held that acquired germ-plasm variation was inherited. An irony, which is in tension with much of the standard twentieth-century history of biology, thus exists – Weismann was not a Weismannian. I distinguish three (...)
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  7. Varieties of Modules: Kinds, Levels, Origins, and Behaviors.Rasmus Grønfeldt Winther - 2001 - Journal of Experimental Zoology 291:116-129.
    This article began as a review of a conference, organized by Gerhard Schlosser, entitled “Modularity in Development and Evolution.” The conference was held at, and sponsored by, the Hanse Wissenschaftskolleg in Delmenhorst, Germany in May, 2000. The article subsequently metamorphosed into a literature and concept review as well as an analysis of the differences in current perspectives on modularity. Consequently, I refer to general aspects of the conference but do not review particular presentations. I divide modules into three kinds: structural, (...)
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Developmental Systems Theory
  1. Causal Specificity, Biological Possibility and Non-Parity About Genetic Causes.Marcel Weber - manuscript
    Several authors have used the notion of causal specificity in order to defend non-parity about genetic causes (Waters 2007, Woodward 2010, Weber 2017, forthcoming). Non-parity in this context is the idea that DNA and some other biomolecules that are often described as information-bearers by biologists play a unique role in life processes, an idea that has been challenged by Developmental Systems Theory (e.g., Oyama 2000). Indeed, it has proven to be quite difficult to state clearly what the alleged special role (...)
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  2. Контуры нового мирового порядка.Leonid Grinin - 2015 - Философия И Общество 3 (4):7-33.
    Мировой порядок как система определенных идей и правил, господ-ствующих в международной политике, стал формироваться в Европе начиная с XVI в., окончательно утвердившись в XIX столетии. Однако этот порядок держится обычно в пределах трех-четырех десятилетий, а затем под влиянием изменившихся обстоятельств и нового баланса сил меняется. В настоящее время мы как раз переживаем период смены ми-рового порядка и начала формирования новой его системы. В статье анализируется начало ослабления мирового порядка, основанного на американской гегемонии, рассматриваются характерные черты и методы, которые используют США (...)
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  3. A Developmental Systems Account of Human Nature.Karola Stotz & Paul Edmund Griffiths - 2018 - In Tim Lewens & Elizabeth Hannon (eds.), Why we disagree about human nature. Oxford & New York: Oxford University Press. pp. 00-00.
    It is now widely accepted that a scientifically credible conception of human nature must reject the folkbiological idea of a fixed, inner essence that makes us human. We argue here that to understand human nature is to understand the plastic process of human development and the diversity it produces. Drawing on the framework of developmental systems theory and the idea of developmental niche construction we argue that human nature is not embodied in only one input to development, such as the (...)
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  4. Developmental Systems Theory as a Process Theory.Paul Edmund Griffiths & Karola Stotz - forthcoming - In Daniel J. Nicholson & John Dupre (eds.), Everything Flows: Towards a Processual Philosophy of Biology. Oxford & New York: Oxford University Press. pp. 00-00.
    Griffiths and Russell D. Gray (1994, 1997, 2001) have argued that the fundamental unit of analysis in developmental systems theory should be a process – the life cycle – and not a set of developmental resources and interactions between those resources. The key concepts of developmental systems theory, epigenesis and developmental dynamics, both also suggest a process view of the units of development. This chapter explores in more depth the features of developmental systems theory that favour treating processes as fundamental (...)
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  5. Which Kind of Causal Specificity Matters Biologically?Marcel Weber - 2017 - Philosophy of Science 84 (3):574-585.
    Griffiths et al. (2015) have proposed a quantitative measure of causal specificity and used it to assess various attempts to single out genetic causes as being causally more specific than other cellular mechanisms, for example, alternative splicing. Focusing in particular on developmental processes, they have identified a number of important challenges for this project. In this discussion note, I would like to show how these challenges can be met.
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  6. Programming the Emergence in Morphogenetically Architected Complex Systems.Franck Varenne, Pierre Chaigneau, Jean Petitot & René Doursat - 2015 - Acta Biotheoretica 63 (3):295-308.
    Large sets of elements interacting locally and producing specific architectures reliably form a category that transcends the usual dividing line between biological and engineered systems. We propose to call them morphogenetically architected complex systems (MACS). While taking the emergence of properties seriously, the notion of MACS enables at the same time the design (or “meta-design”) of operational means that allow controlling and even, paradoxically, programming this emergence. To demonstrate our claim, we first show that among all the self-organized systems studied (...)
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  7. Regeneration of Hydra From Aggregated Cells.Alfred Gierer, S. Berking, H. Bode, C. N. David, K. Flick, G. Hansmann, H. Schaller & E. Trenkner - 1972 - Nature New Biology 239:98-101.
    • Aggregates of previously isolated cells of Hydra are capable, under suitable solvant conditions, of regeneration forming complete animals. In a first stage, ecto- and endodermal cells sort out, producing the bilayered hollow structure characteristic of Hydra tissue; thereafter, heads are formed (even if the original cell preparation contained no head cells), eventually leading to the separation of normal animals with head, body column and foot. Hydra appears to be the highest type of organism that allows for regeneration of the (...)
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  8. Developmental Systems Theory.Paul Griffiths & Adam Hochman - 2015 - eLS:1-7.
    Developmental systems theory (DST) is a wholeheartedly epigenetic approach to development, inheritance and evolution. The developmental system of an organism is the entire matrix of resources that are needed to reproduce the life cycle. The range of developmental resources that are properly described as being inherited, and which are subject to natural selection, is far wider than has traditionally been allowed. Evolution acts on this extended set of developmental resources. From a developmental systems perspective, development does not proceed according to (...)
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  9. Generation of Biological Patterns and Form: Some Physical, Mathematical and Logical Aspects.Alfred Gierer - 1981 - Progress in Biophysics and Molecular Biology 37 (1):1-48.
    While many different mechanisms contribute to the generation of spatial order in biological development, the formation of morphogenetic fields which in turn direct cell responses giving rise to pattern and form are of major importance and essential for embryogenesis and regeneration. Most likely the fields represent concentration patterns of substances produced by molecular kinetics. Short range autocatalytic activation in conjunction with longer range “lateral” inhibition or depletion effects is capable of generating such patterns (Gierer and Meinhardt, 1972). Non-linear reactions are (...)
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  10. The Hydra Model - a Model for What?Alfred Gierer - 2012 - International Journal of Developmental Biology 56:437-445.
    The introductory personal remarks refer to my motivations for choosing research projects, and for moving from physics to molecular biology and then to development, with Hydra as a model system. Historically, Trembley’s discovery of Hydra regeneration in 1744 was the begin¬ning of developmental biology as we understand it, with passionate debates about preformation versus de novo generation, mechanisms versus organisms. In fact, seemingly conflicting bottom-up and top-down concepts are both required in combination to understand development. In modern terms, this means (...)
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  11. A Theory of Biological Pattern Formation.Alfred Gierer & Hans Meinhardt - 1972 - Kybernetik, Continued as Biological Cybernetics 12 (1):30 - 39.
    The paper addresses the formation of striking patterns within originally near-homogenous tissue, the process prototypical for embryology, and represented in particularly purist form by cut sections of hydra regenerating, by internal reorganisation of the pre-existing tissue, a complete animal with head and foot. The essential requirements are autocatalytic, self-enhancing activation, combined with inhibitory or depletion effects of wider range – “lateral inhibition”. Not only de-novo-pattern formation, but also well known, striking features of developmental regulation such as induction, inhibition, and proportion (...)
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  12. The Dispositional Genome: Primus Inter Pares.Christopher J. Austin - 2015 - Biology and Philosophy 30 (2):227-246.
    According to the proponents of Developmental Systems Theory and the Causal Parity Thesis, the privileging of the genome as “first among equals” with respect to the development of phenotypic traits is more a reflection of our own heuristic prejudice than of ontology - the underlying causal structures responsible for that specified development no more single out the genome as primary than they do other broadly “environmental” factors. Parting with the methodology of the popular responses to the Thesis, this paper offers (...)
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  13. Explaining Causal Selection with Explanatory Causal Economy: Biology and Beyond.L. R. Franklin-Hall - 2015 - In P.-A. Braillard & C. Malaterre (eds.), Explanation in Biology: An Enquiry into the Diversity of Explanatory Patterns in the Life Sciences. Springer. pp. 413-438.
    Among the factors necessary for the occurrence of some event, which of these are selectively highlighted in its explanation and labeled as causes — and which are explanatorily omitted, or relegated to the status of background conditions? Following J. S. Mill, most have thought that only a pragmatic answer to this question was possible. In this paper I suggest we understand this ‘causal selection problem’ in causal-explanatory terms, and propose that explanatory trade-offs between abstraction and stability can provide a principled (...)
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  14. Causal Selection Versus Causal Parity in Biology: Relevant Counterfactuals and Biologically Normal Interventions.Marcel Weber - forthcoming - In C. Kenneth Waters & James Woodward (eds.), Philosophical Perspectives on Causal Reasoning in Biology. Minnesota Studies in Philosophy of Science. Vol. XXI. Minneapolis: University of Minnesota Press.
    Causal selection is the task of picking out, from a field of known causally relevant factors, some factors as elements of an explanation. The Causal Parity Thesis in the philosophy of biology challenges the usual ways of making such selections among different causes operating in a developing organism. The main target of this thesis is usually gene centrism, the doctrine that genes play some special role in ontogeny, which is often described in terms of information-bearing or programming. This paper is (...)
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  15. The Phylogeny Fallacy and the Ontogeny Fallacy.Adam Hochman - 2013 - Biology and Philosophy 28 (4):593-612.
    In 1990 Robert Lickliter and Thomas Berry identified the phylogeny fallacy, an empirically untenable dichotomy between proximate and evolutionary causation, which locates proximate causes in the decoding of ‘ genetic programs’, and evolutionary causes in the historical events that shaped these programs. More recently, Lickliter and Hunter Honeycutt argued that Evolutionary Psychologists commit this fallacy, and they proposed an alternative research program for evolutionary psychology. For these authors the phylogeny fallacy is the proximate/evolutionary distinction itself, which they argue constitutes a (...)
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  16. The Central Dogma as a Thesis of Causal Specificity.Marcel Weber - 2006 - History and Philosophy of the Life Sciences 28 (4):595-610.
    I present a reconstruction of F.H.C. Crick's two 1957 hypotheses "Sequence Hypothesis" and "Central Dogma" in terms of a contemporary philosophical theory of causation. Analyzing in particular the experimental evidence that Crick cited, I argue that these hypotheses can be understood as claims about the actual difference-making cause in protein synthesis. As these hypotheses are only true if restricted to certain nucleic acids in certain organisms, I then examine the concept of causal specificity and its potential to counter claims about (...)
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  17. Extended Cognition, Extended Selection, and Developmental Systems Theory.Robert D. Rupert - manuscript
    I respond to Karola Stotz's criticisms of my previously published challenges to the inference from developmental systems theory to an extended view of cognition.
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  18. The New Evolutionary Synthesis: Around the Corner, or Impossible Chimaera? [REVIEW]Massimo Pigliucci - 2003 - Quarterly Review of Biology 78 (4):449-453.
    In the fall of 1990 I had just began my doc- toral studies at the University of Connecticut. Freshly arrived from Italy, I came to the United States to work with Carl Schlichting on something to do with phenotypic plastic- ity. I spent most of that semester discussing with other graduate students what I thought was a momentous paper by Mary Jane West- Eberhard (1989) in the Annual Review of Ecol- ogy and Systematics. That paper, entitled Phe- notypic Plasticity and (...)
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  19. Genotype–Phenotype Mapping and the End of the ‘Genes as Blueprint’ Metaphor.Massimo Pigliucci - 2010 - Philosophical Transactions Royal Society B 365:557–566.
    In a now classic paper published in 1991, Alberch introduced the concept of genotype–phenotype (G!P) mapping to provide a framework for a more sophisticated discussion of the integration between genetics and developmental biology that was then available. The advent of evo-devo first and of the genomic era later would seem to have superseded talk of transitions in phenotypic space and the like, central to Alberch’s approach. On the contrary, this paper shows that recent empirical and theoretical advances have only sharpened (...)
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Ecological Developmental Biology
  1. The Hologenome Concept of Evolution: A Philosophical and Biological Study.Javier Suárez - 2019 - Dissertation, University of Exeter
    The hologenome concept of evolution is a hypothesis about the evolution of animals and plants. It asserts that the evolution of animals and plants was partially triggered by their interactions with their symbiotic microbiomes. In that vein, the hologenome concept posits that the holobiont (animal host + symbionts of the microbiome) is a unit of selection. -/- The hologenome concept has been severely criticized on the basis that selection on holobionts would only be possible if there were a tight transgenerational (...)
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  2. Forrageamento Por Recurso Alternativo Em Época de Estiagem Por Apis Mellifera Linnaeus, 1758.Bruno Corrêa Barbosa, Tatiane Tagliatti Maciel & Fabio Prezoto - 2015 - Mensagem Doce 131 (2):1-4.
    Forrageamento por Recurso Alternativo em Época de Estiagem por Apis mellifera Linnaeus, 1758.
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  3. Review of Jan-Christoph Heiliger (ed.), Naturgeschichte der Freiheit. [REVIEW]Marco Solinas - 2008 - Iride: Filosofia e Discussione Pubblica (54):496-498.
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  4. The Phylogeny Fallacy and the Ontogeny Fallacy.Adam Hochman - 2013 - Biology and Philosophy 28 (4):593-612.
    In 1990 Robert Lickliter and Thomas Berry identified the phylogeny fallacy, an empirically untenable dichotomy between proximate and evolutionary causation, which locates proximate causes in the decoding of ‘ genetic programs’, and evolutionary causes in the historical events that shaped these programs. More recently, Lickliter and Hunter Honeycutt argued that Evolutionary Psychologists commit this fallacy, and they proposed an alternative research program for evolutionary psychology. For these authors the phylogeny fallacy is the proximate/evolutionary distinction itself, which they argue constitutes a (...)
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  5. En Kropslig Kultur Historie - om omverdens relationen".Maria Brincker - 2012 - In E. O. Pedersen & A.-M. S. Christensen (eds.), Mennesket - En Introduktion Til Filosofisk Antropologi. Systime. pp. 197-216.
    This chapter deals with the way our psychology and actions a scaffolded by their environment but also the tensions that can appear between individual and environment, both at the level of biology and culture. The chapter is grounded in an analysis of the early 20th century theoretical biologist Jacob von Uexkull and his notion of "Umwelt" or "surround world". But also raises the question of whether organisms fit their environment as neatly as Uexkull and many later thinkers have proposed or (...)
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