Results for 'Liu Hongfang'

38 found
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  1.  97
    Framework for a Protein Ontology.Darren A. Natale, Cecilia N. Arighi, Winona Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith & Cathy H. Wu - 2007 - BMC Bioinformatics 8 (Suppl 9):S1.
    Biomedical ontologies are emerging as critical tools in genomic and proteomic research where complex data in disparate resources need to be integrated. A number of ontologies exist that describe the properties that can be attributed to proteins; for example, protein functions are described by Gene Ontology, while human diseases are described by Disease Ontology. There is, however, a gap in the current set of ontologies—one that describes the protein entities themselves and their relationships. We have designed a PRotein Ontology (PRO) (...)
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  2.  62
    TGF-Beta Signaling Proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  3. A Robust Defence of the Doctrine of Doing and Allowing.Xiaofei Liu - 2012 - Utilitas 24 (1):63-81.
    Philosophers debate over the truth of the Doctrine of Doing and Allowing, the thesis that there is a morally significant difference between doing harm and merely allowing harm to happen. Deontologists tend to accept this doctrine, whereas consequentialists tend to reject it. A robust defence of this doctrine would require a conceptual distinction between doing and allowing that both matches our ordinary use of the concepts in a wide range of cases and enables a justification for the alleged moral difference. (...)
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  4.  56
    Pain and Spatial Inclusion: Evidence From Mandarin.Michelle Liu & Colin Klein - forthcoming - Analysis:anz032.
    The surface grammar of reports such as ‘I have a pain in my leg’ suggests that pains are objects which are spatially located in parts of the body. We show that the parallel construction is not available in Mandarin. Further, four philosophically important grammatical features of such reports cannot be reproduced. This suggests that arguments and puzzles surrounding such reports may be tracking artefacts of English, rather than philosophically significant features of the world.
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  5.  24
    Two Tales of Epistemic Models.Yang Liu - forthcoming - Thought: A Journal of Philosophy.
    This short paper has two parts. First, we prove a generalisation of Aumann's surprising impossibility result in the context of rational decision making. We then move, in the second part, to discuss the interpretational meaning of some formal setups of epistemic models, and we do so by means of presenting an interesting puzzle in epistemic logic. The aim is to highlight certain problematic aspects of these epistemic systems concerning first/third-person asymmetry which underlies both parts of the story. This asymmetry, we (...)
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  6.  37
    Phenomenal Experience and the Thesis of Revelation.Michelle Liu - 2019 - In Dena Shottenkirk, Manuel Curado & Steven S. Gouveia (eds.), Perception, Cognition and Aesthetics. New York: Routledge. pp. 227-251.
    In the philosophy of mind, revelation is the claim that the nature of qualia is revealed in phenomenal experience. In the literature, revelation is often thought of as intuitive but in tension with physicalism. While mentions of revelation are frequent, there is room for further discussion of how precisely to formulate the thesis of revelation and what it exactly amounts to. Drawing on the work of David Lewis, this paper provides a detailed discussion on how the thesis of revelation, as (...)
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  7.  90
    Slurs and Register: A Case Study in Meaning Pluralism.Justina Diaz-Legaspe, Robert Stainton & Chang Liu - 2019 - Mind and Language 34.
    Most theories of slurs fall into one of two families: those which understand slurring terms to involve special descriptive/informational content (however conveyed), and those which understand them to encode special emotive/expressive content. Our view is that both offer essential insights, but that part of what sets slurs apart is use-theoretic content. In particular, we urge that slurring words belong at the intersection of a number of categories in a sociolinguistic register taxonomy, one that usually includes [+slang] and [+vulgar] and always (...)
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  8.  92
    Countable Additivity, Idealization, and Conceptual Realism.Yang Liu - forthcoming - Economics and Philosophy.
    This paper addresses the issue of finite versus countable additivity in Bayesian probability and decision theory -- in particular, Savage's theory of subjective expected utility and personal probability. I show that Savage's reason for not requiring countable additivity in his theory is inconclusive. The assessment leads to an analysis of various highly idealised assumptions commonly adopted in Bayesian theory, where I argue that a healthy dose of, what I call, conceptual realism is often helpful in understanding the interpretational value of (...)
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  9. A Simpler and More Realistic Subjective Decision Theory.Haim Gaifman & Yang Liu - 2018 - Synthese 195 (10):4205–4241.
    In his classic book “the Foundations of Statistics” Savage developed a formal system of rational decision making. The system is based on (i) a set of possible states of the world, (ii) a set of consequences, (iii) a set of acts, which are functions from states to consequences, and (iv) a preference relation over the acts, which represents the preferences of an idealized rational agent. The goal and the culmination of the enterprise is a representation theorem: Any preference relation that (...)
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  10.  70
    Ramsey and Joyce on Deliberation and Prediction.Yang Liu & Huw Price - forthcoming - Synthese:1-22.
    Can an agent deliberating about an action A hold a meaningful credence that she will do A? 'No', say some authors, for 'Deliberation Crowds Out Prediction' (DCOP). Others disagree, but we argue here that such disagreements are often terminological. We explain why DCOP holds in a Ramseyian operationalist model of credence, but show that it is trivial to extend this model so that DCOP fails. We then discuss a model due to Joyce, and show that Joyce's rejection of DCOP rests (...)
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  11.  21
    Heads and Tails: Molecular Imagination and the Lipid Bilayer, 1917–1941.Daniel Liu - 2018 - In Karl Matlin, Jane Maienschein & Manfred Laubichler (eds.), Visions of Cell Biology: Reflections Inspired by Cowdry's General Cytology. Chicago: University of Chicago Press. pp. 209-245.
    Today, the lipid bilayer structure is nearly ubiquitous, taken for granted in even the most rudimentary introductions to cell biology. Yet the image of the lipid bilayer, built out of with lipids with heads and tails, went from having obscure origins deep in colloid chemical theory in 1924 to being “obvious to any competent physical chemist” by 1935. This chapter examines how this schematic, strictly heuristic explanation of the idea of molecular orientation was developed within colloid physical chemistry, and how (...)
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  12. Heart of DARCness.Yang Liu & Huw Price - 2019 - Australasian Journal of Philosophy 97 (1):136-150.
    There is a long-standing disagreement in the philosophy of probability and Bayesian decision theory about whether an agent can hold a meaningful credence about an upcoming action, while she deliberates about what to do. Can she believe that it is, say, 70% probable that she will do A, while she chooses whether to do A? No, say some philosophers, for Deliberation Crowds Out Prediction (DCOP), but others disagree. In this paper, we propose a valid core for DCOP, and identify terminological (...)
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  13.  84
    Context-Dependent Utilities.Haim Gaifman & Yang Liu - 2015 - In Wiebe Van Der Hoek, Wesley H. Holliday & Wen Fang Wang (eds.), Logic, Rationality, and Interaction. Springer. pp. 90-101.
    Savage's framework of subjective preference among acts provides a paradigmatic derivation of rational subjective probabilities within a more general theory of rational decisions. The system is based on a set of possible states of the world, and on acts, which are functions that assign to each state a consequence€. The representation theorem states that the given preference between acts is determined by their expected utilities, based on uniquely determined probabilities (assigned to sets of states), and numeric utilities assigned to consequences. (...)
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  14. "Click!" Bait for Causalists.Huw Price & Yang Liu - 2018 - In Arif Ahmed (ed.), Newcomb's Problem. Cambridge ; New York, NY: Cambridge University Press. pp. 160-179.
    Causalists and Evidentialists can agree about the right course of action in an (apparent) Newcomb problem, if the causal facts are not as initially they seem. If declining $1,000 causes the Predictor to have placed $1m in the opaque box, CDT agrees with EDT that one-boxing is rational. This creates a difficulty for Causalists. We explain the problem with reference to Dummett's work on backward causation and Lewis's on chance and crystal balls. We show that the possibility that the causal (...)
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  15. HCI Model with Learning Mechanism for Cooperative Design in Pervasive Computing Environment.Hong Liu, Bin Hu & Philip Moore - 2015 - Journal of Internet Technology 16.
    This paper presents a human-computer interaction model with a three layers learning mechanism in a pervasive environment. We begin with a discussion around a number of important issues related to human-computer interaction followed by a description of the architecture for a multi-agent cooperative design system for pervasive computing environment. We present our proposed three- layer HCI model and introduce the group formation algorithm, which is predicated on a dynamic sharing niche technology. Finally, we explore the cooperative reinforcement learning and fusion (...)
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  16.  98
    A Semantic Approach for Knowledge Capture of microRNA-Target Gene Interactions.Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang & Zixing Liu - 2015 - In IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015),. pp. 975-982.
    Research has indicated that microRNAs (miRNAs), a special class of non-coding RNAs (ncRNAs), can perform important roles in different biological and pathological processes. miRNAs’ functions are realized by regulating their respective target genes (targets). It is thus critical to identify and analyze miRNA-target interactions for a better understanding and delineation of miRNAs’ functions. However, conventional knowledge discovery and acquisition methods have many limitations. Fortunately, semantic technologies that are based on domain ontologies can render great assistance in this regard. In our (...)
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  17. Frege's Begriffsschrift is Indeed First-Order Complete.Yang Liu - 2017 - History and Philosophy of Logic 38 (4):342-344.
    It is widely taken that the first-order part of Frege's Begriffsschrift is complete. However, there does not seem to have been a formal verification of this received claim. The general concern is that Frege's system is one axiom short in the first-order predicate calculus comparing to, by now, the standard first-order theory. Yet Frege has one extra inference rule in his system. Then the question is whether Frege's first-order calculus is still deductively sufficient as far as the first-order completeness is (...)
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  18. The Sure-Thing Principle and P2.Yang Liu - 2017 - Economics Letters 159:221-223.
    This paper offers a fine analysis of different versions of the well known sure-thing principle. We show that Savage's formal formulation of the principle, i.e., his second postulate (P2), is strictly stronger than what is intended originally.
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  19. Prioritized Imperatives and Normative Conflicts.Fengkui Ju & Fenrong Liu - 2011 - European Journal of Analytic Philosophy 7 (2):35-58.
    Imperatives occur ubiquitously in natural languages. They produce forces which change the addressee’s cognitive state and regulate her actions accordingly. In real life we often receive conflicting orders, typically, issued by various authorities with different ranks. A new update semantics is proposed in this paper to formalize this idea. The general properties of this semantics, as well as its background ideas are discussed extensively. In addition, we compare our framework with other approaches of deontic logics in the context of normative (...)
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  20. Moral Reason, Moral Sentiments and the Realization of Altruism: A Motivational Theory of Altruism.JeeLoo Liu - 2012 - Asian Philosophy 22 (2):93-119.
    This paper begins with Thomas Nagel's (1970) investigation of the possibility of altruism to further examine how to motivate altruism. When the pursuit of the gratification of one's own desires generally has an immediate causal efficacy, how can one also be motivated to care for others and to act towards the well-being of others? A successful motivational theory of altruism must explain how altruism is possible under all these motivational interferences. The paper will begin with an exposition of Nagel's proposal, (...)
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  21.  67
    No Fats, Femmes, or Asians.Xiaofei Liu - 2015 - Moral Philosophy and Politics 2 (2).
    A frequent caveat in online dating profiles – “No fats, femmes, or Asians” – caused an LGBT activist to complain about the bias against Asians in the American gay community, which he called “racial looksism”. In response, he was asked that, if he himself would not date a fat person, why he should find others not dating Asians so upsetting. This response embodies a popular attitude that personal preferences or tastes are simply personal matters – they are not subject to (...)
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  22. Water Ethics and Water Resource Management.Jie Liu, Amarbayasgalan Dorjderem, Jinhua Fu, Xiaohui Lei & Darryl Macer - 2011 - UNESCO.
    This book examines some possible ethical principles to resolve moral dilemmas involving water. Existing problems in current water management practices are discussed in light of these principles. Transformation of human water ethics has the potential to be far more effective, cheaper and acceptable than some existing means of “regulation”, but transformation of personal and societal ethics need time because the changes to ethical values are slow.
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  23.  86
    A Moral Reason to Be a Mere Theist: Improving the Practical Argument.Xiaofei Liu - 2016 - International Journal for Philosophy of Religion 79 (2):113-132.
    This paper is an attempt to improve the practical argument for beliefs in God. Some theists, most famously Kant and William James, called our attention to a particular set of beliefs, the Jamesian-type beliefs, which are justified by virtue of their practical significance, and these theists tried to justify theistic beliefs on the exact same ground. I argue, contra the Jamesian tradition, that theistic beliefs are different from the Jamesian-type beliefs and thus cannot be justified on the same ground. I (...)
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  24.  81
    Fictionalism, Realism, Empiricism on Scientific Models.Chuang Liu - manuscript
    This paper defends an approach to modeling and models in science that is against model fictionalism of a recent stripe (the “new fictionalism” that takes models to be abstract entities that are analogous to works of fiction). It further argues that there is a version of fictionalism on models to which my approach is neutral and which only makes sense if one adopts a special sort of antirealism (e.g. constructive empiricism). Otherwise, my approach strongly suggests that one stays away from (...)
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  25.  86
    Symbols Versus Models.Chuang Liu - manuscript
    In this paper I argue against a deflationist view that as representational vehicles symbols and models do their jobs in essentially the same way. I argue that symbols are conventional vehicles whose chief function is denotation while models are epistemic vehicles whose chief function is showing what their targets are like in the relevant aspects. It is further pointed out that models usually do not rely on similarity or some such relations to relate to their targets. For that referential relation (...)
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  26.  29
    This is the Synthetic Biology That Is. [REVIEW]Daniel Liu - 2017 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 63:89-93.
    Review of: Sophia Roosth, Synthetic: How Life Got Made (University of Chicago Press, 2017); and Andrew S. Balmer, Katie Bulpin, and Susan Molyneux-Hodgson, Synthetic Biology: A Sociology of Changing Practices (Palgrave Macmillan, 2016).
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  27.  20
    Sartre’s Godless Theology: Dualist Monism and Its Temporal Dimensions.Renxiang Liu - 2019 - Open Theology 5 (1):182-197.
    My task in this paper is to study Sartre’s ontology as a godless theology. The urgency of defending freedom and responsibility in the face of determinism called for an overarching first principle, a role that God used to play. I first show why such a principle is important and how Sartre filled the void that God had left with a solipsist consciousness. Then I characterize Sartre’s ontology of this consciousness as a “dualist monism”, explaining how it supports his radical conception (...)
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  28. Research on Context-Awareness Mobile SNS Recommendation Algorithm.Zhijun Zhang & Hong Liu - 2015 - Pattern Recognition and Artificial Intelligence 28.
    Although patterns of human activity show a large degree of freedom, they exhibit structural patterns subjected by geographic and social constraints. Aiming at various problems of personalized recommendation in mobile networks, a social network recommendation algorithm is proposed with a variety of context-aware information and combined with a series of social network analysis methods.Based on geographical location and temporal information, potential social relations among users are mined deeply to find the most similar set of users for the target user, then (...)
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  29.  91
    上下文感知的移动社交网络推荐算法研究.Zhijun Zhang & Hong Liu - 2015 - 模式识别与人工智能 28 (5):404-410.
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  30.  81
    云南旱灾凸显的水利弊端及解决措施.红晋 刘 & Hongjin Liu - 2012 - 农业考古 2012 (3):144-146.
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  31.  28
    江南水利开发技术引入溯源.红晋 刘 & Hongjin Liu - 2011 - 水利发展研究 2011 (10):75-77.
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  32.  91
    Children with Reading Disability Show Brain Differences in Effective Connectivity for Visual, but Not Auditory Word Comprehension.Li Liu, Vira Amit, Emma Friedman & James Booth - 2010 - PLoS ONE 10.
    Background -/- Previous literature suggests that those with reading disability (RD) have more pronounced deficits during semantic processing in reading as compared to listening comprehension. This discrepancy has been supported by recent neuroimaging studies showing abnormal activity in RD during semantic processing in the visual but not in the auditory modality. Whether effective connectivity between brain regions in RD could also show this pattern of discrepancy has not been investigated. Methodology/Principal Findings -/- Children (8- to 14-year-olds) were given a semantic (...)
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  33. Heavy Metals Contamination in Greenhouse Soils and Vegetables in Guanzhong, China.Ling Liu - 2014 - Journal of Encapsulation and Adsorption Sciences 4:80-88.
    This study used a flame atomic absorption spectrometer (FAAS) and atomic fluorescence spec-trophotometer (AFS) to detect the concentrations of chromium (Cr), cadmium (Cd), lead (Pb), hy-drargyrum (Hg) and arsenic (As) in soils and three genotypes of vegetables in greenhouse, as well as analyzed the physical and chemical properties of soils, including soil pH, soil organic matter (OM), basic nutrients, electrical conductivity (EC) and cation exchange capacity (CEC) in Guan- zhong areas, Shaanxi province, China. The results showed that comparing to subsoil, (...)
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  34.  93
    The Evil of Refraining to Save: Liu on the Doctrine of Doing and Allowing.Jacob Blair - 2017 - Diametros 52:127-137.
    In a recent article, Xiaofei Liu seeks to defend, from the standpoint of consequentialism, the Doctrine of Doing and Allowing: DDA. While there are various conceptions of DDA, Liu understands it as the view that it is more difficult to justify doing harm than allowing harm. Liu argues that a typical harm doing involves the production of one more evil and one less good than a typical harm allowing. Thus, prima facie, it takes a greater amount of good to justify (...)
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  35.  86
    The Case Against Asian Authoritarianism: A Libertarian Reading of Liu E's The Travels of Laocan.Cesar Guarde-Paz - unknown - Libertarian Papers 8.
    The present paper offers a libertarian reading of one of the most important Chinese novels of the twentieth century, The Travels of Laocan, written by Chinese entrepreneur Liu E between 1903 and 1906. I start with an exposition of the ideas associated with the concept of “Asian values,” the evident cultural unviability of this notion, and how “Asian authoritarianism” has been rationalized and justified on the basis of a Hobbesian conception of human nature. Next, I examine Liu E’s life and (...)
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  36.  64
    Do Filial Values Corrupt? How Can We Know? Clarifying and Assessing the Recent Confucian Debate.Hagop Sarkissian - forthcoming - Dao: A Journal of Comparative Philosophy.
    In a number of papers, Liu Qingping has critiqued Confucianism’s commitment to ‘consanguineous affection’ or filial values, claiming it to be excessive and indefensible. Many have taken issue with his textual readings and interpretive claims, but these responses do little to undermine the force of his central claim that filial values cause widespread corruption in Chinese society. This is not an interpretive claim but an empirical one. If true, it merits serious consideration. But is it true? How can we know? (...)
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  37. Islamic Ethics and the Controversy About the Moral Heart of Confucianism.Mohammad Ashraf Adeel - 2008 - Dao: A Journal of Comparative Philosophy 7 (2):151-156.
    This essay briefly evaluates the ongoing controversy between LIU Qingping and GUO Qiyong (and their followers) about the “moral heart ”of Confucianism in order to draw acomparison with Islamic ethics for mutual illumination of the two traditions.
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  38. Considerazioni sui fondamenti della Meccanica Statistica.Sergio Chibbaro, Lamberto Rondoni & Angelo Vulpiani - 2012 - In Vincenzo Fano, Enrico Giannetto, Giulia Giannini & Pierluigi Graziani (eds.), Complessità e Riduzionismo. pp. 126-140.
    A differenza della meccanica quantistica, i cui fondamenti sono sempre stati al centro di un ininterrotto dibattito, gli aspetti concettuali della meccanica statistica non hanno attratto interessi così vasti; tra le eccezioni citiamo il bel libro di Emch e Liu. In questo breve contributo discuteremo alcuni problemi concettuali della meccanica statistica, in particolare il ruolo del caos e l’emergenza di proprietà collettive che appaiono quando il numero delle particelle del sistema è molto grande.
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