- The Relevance of Philosophical Ontology to Information and Computer Science.Barry Smith - 2014 - In Ruth Hagenbruger & Uwe V. Riss (eds.), Philosophy, computing and information science. Pickering & Chattoo. pp. 75-83.details
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The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson, Barry Smith & Others - 2013 - Plant and Cell Physiology 54 (2):1-23..details
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The Neurological Disease Ontology.Mark Jensen, Alexander P. Cox, Naveed Chaudhry, Marcus Ng, Donat Sule, William Duncan, Patrick Ray, Bianca Weinstock-Guttman, Barry Smith, Alan Ruttenberg, Kinga Szigeti & Alexander D. Diehl - 2013 - Journal of Biomedical Semantics 4 (42):42.details
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Classificatory Theory in Data-intensive Science: The Case of Open Biomedical Ontologies.Sabina Leonelli - 2012 - International Studies in the Philosophy of Science 26 (1):47 - 65.details
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“Just one animal among many?” Existential phenomenology, ethics, and stem cell research.Norman K. Swazo - 2010 - Theoretical Medicine and Bioethics 31 (3):197-224.details
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Towards a dispositionalist (and unifying) account of addiction.Robert M. Kelly - 2023 - Theoretical Medicine and Bioethics 44 (1):21-40.details
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A survey of requirements for automated reasoning services for bio-ontologies in OWL.M. Scott Marshall, C. Maria Keet & Marco Roos - unknowndetails
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Aging Neuro-Behavior Ontology.Fernando Martínez-Santiago, M. Rosario García-Viedma, John A. Williams, Luke T. Slater & Georgios V. Gkoutos - 2020 - Applied ontology 15 (2):219-239.details
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From Berman and Hafner’s teleological context to Baude and Sachs’ interpretive defaults: an ontological challenge for the next decades of AI and Law.Ronald P. Loui - 2016 - Artificial Intelligence and Law 24 (4):371-385.details
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Classificatory Theory in Biology.Sabina Leonelli - 2013 - Biological Theory 7 (4):338-345.details
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Mapping the Patient’s Experience: An Applied Ontological Framework for Phenomenological Psychopathology.Rasmus Rosenberg Larsen & Janna Hastings - 2020 - Phenomenology and Mind 18:200-219.details
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Why Machines Will Never Rule the World: Artificial Intelligence without Fear.Jobst Landgrebe & Barry Smith - 2022 - Abingdon, England: Routledge.details
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Making AI Meaningful Again.Jobst Landgrebe & Barry Smith - 2021 - Synthese 198 (March):2061-2081.details
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Coordinating virus research: The Virus Infectious Disease Ontology.John Beverley, Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He, Regina Hurley, Eric Merrell, Richard H. Scheuermann & Barry Smith - 2024 - PLoS ONE 1.details
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Scientific discovery as a combinatorial optimisation problem: How best to navigate the landscape of possible experiments?Douglas B. Kell - 2012 - Bioessays 34 (3):236-244.details
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Ontology development is consensus creation, not (merely) representation.Fabian Neuhaus & Janna Hastings - 2022 - Applied ontology 17 (4):495-513.details
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Special Issue: Philosophical Considerations in the Teaching of Biology. Part I, Philosophy of Biology and Biological Explanation.Kostas Kampourakis (ed.) - 2013 - Springer (Science & Education).details
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The bridge between philosophy and information-driven science.Barry Smith - 2021 - Journal of Knowledge Structures and Systems 2 (2):47-55.details
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What is a cognitive ontology, anyway?Annelli Janssen, Colin Klein & Marc Slors - 2017 - Philosophical Explorations 20 (2):123-128.details
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Using ontologies to study cell transitions.Ludger Jansen, G. Fuellen, U. Leser & A. Kurtz - 2012 - In M. Boeker, H. Herre, R. Hoehndorf & F. Loebe (eds.), OBML 2012. Workshop Proceedings. Dresden, September 27-28.details
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Teaching Good Biomedical Ontology Design.D. Seddig-Raufie, M. Boeker, S. Schulz, N. Grewe, J. Röhl, L. Jansen & D. Schober - 2012 - In Ronald Cornet & Robert Stevens (eds.), International Conference for Biomedical Ontologies (ICBO 2012), KR-MED Series, Graz, Austria July 21-25, 2012.details
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Biomedical Ontologies.Barry Smith - 2022 - In Peter L. Elkin (ed.), Terminology, Ontology and Their Implementations: Teaching Guide and Notes. Springer. pp. 125-169.details
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The Full Bayesian Significance Test for Mixture Models: Results in Gene Expression Clustering.Julio Michael Stern, Marcelo de Souza Lauretto & Carlos Alberto de Braganca Pereira - 2008 - Genetics and Molecular Research 7 (3):883-897.details
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The development of non-coding RNA ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.details
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A domain ontology for the non-coding RNA field.Jingshan Huang, Karen Eilbeck, Judith A. Blake, Dejing Dou, Darren A. Natale, Alan Ruttenberg, Barry Smith, Michael T. Zimmermann, Guoqian Jiang & Yu Lin - 2015 - In Huang Jingshan, Eilbeck Karen, Blake Judith A., Dou Dejing, Natale Darren A., Ruttenberg Alan, Smith Barry, Zimmermann Michael T., Jiang Guoqian & Lin Yu (eds.), IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015). pp. 621-624.details
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The RNA Ontology (RNAO): an ontology for integrating RNA sequence and structure data.Robert Hoehndorf, Colin Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris J. Mungall, Jane S. Richardson, Jesse Stombaugh & Eric Westhof - 2011 - Applied ontology 6 (1):53-89.details
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Interdisciplinary Collaboration in Philosophy.Andrew Higgins & Alexis Dyschkant - 2014 - Metaphilosophy 45 (3):372-398.details
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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin L. Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud & Pankaj Jaiswal - 2018 - Nucleic Acids Research 46 (D1):D1168–D1180.details
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Interdisciplinary perspectives on the development, integration and application of cognitive ontologies.Janna Hastings, Gwen Alexandra Frishkoff, Barry Smith, Mark Jensen, Russell Poldrack, Jessica Turner, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica A. Turner & Maryann E. Martone - 2014 - Frontiers in Neuroinformatics 8 (62):1-7.details
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Interdyscyplinarne perspektywy rozwoju, integracji i zastosowań ontologii poznawczych.Joanna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita Bandrowski, Fahim Imam, Jessica A. Turner & Maryann E. Martone - 2016 - Avant: Trends in Interdisciplinary Studies 7 (3):101-117.details
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On the application of formal principles to life science data: A case study in the Gene Ontology.Jacob Köhler, Anand Kumar & Barry Smith - 2004 - In Köhler Jacob, Kumar Anand & Smith Barry (eds.), Proceedings of DILS 2004 (Data Integration in the Life Sciences), (Lecture Notes in Bioinformatics 2994). Springer. pp. 79-94.details
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National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.details
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Analysing Network Models to Make Discoveries about Biological Mechanisms.William Bechtel - 2019 - British Journal for the Philosophy of Science 70 (2):459-484.details
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Using the hierarchy of biological ontologies to identify mechanisms in flat networks.William Bechtel - 2017 - Biology and Philosophy 32 (5):627-649.details
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The Functional Genetics of Handedness and Language Lateralization: Insights from Gene Ontology, Pathway and Disease Association Analyses.Judith Schmitz, Stephanie Lor, Rena Klose, Onur Güntürkün & Sebastian Ocklenburg - 2017 - Frontiers in Psychology 8.details
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Developing the Quantitative Histopathology Image Ontology : A case study using the hot spot detection problem.Metin Gurcan, Tomaszewski N., Overton John, A. James, Scott Doyle, Alan Ruttenberg & Barry Smith - 2017 - Journal of Biomedical Informatics 66:129-135.details
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The representation of protein complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.details
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Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base.Jiye Ai, Barry Smith & David Wong - 2010 - BMC Bioinformatics 11 (1):302.details
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Applied ontology: The next decade begins.Nicola Guarino & Mark Musen - 2015 - Applied ontology 10 (1):1-4.details
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What do molecular biologists mean when they say 'structure determines function'?Gregor P. Greslehner - unknowndetails
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From commonsense to science, and back: The use of cognitive concepts in neuroscience.Jolien C. Francken & Marc Slors - 2014 - Consciousness and Cognition 29:248-258.details
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The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Lin Yu, Alfred Hero, Barry Smith & Yongqun He - 2016 - Journal of Biomedical Semantics 7 (53).details
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Functions in Basic Formal Ontology.Andrew D. Spear, Werner Ceusters & Barry Smith - 2016 - Applied ontology 11 (2):103-128.details
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The Ontology for Biomedical Investigations.Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert, Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel & Jie Zheng - 2016 - PLoS ONE 11 (4):e0154556.details
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Bio-ontologies as tools for integration in biology.Sabina Leonelli - 2008 - Biological Theory 3 (1):7-11.details
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Towards an Ontology of Cognitive Control.Agatha Lenartowicz, Donald J. Kalar, Eliza Congdon & Russell A. Poldrack - 2010 - Topics in Cognitive Science 2 (4):678-692.details
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Ins and outs of systems biology vis-à-vis molecular biology: Continuation or clear cut?Philippe De Backer, Danny De Waele & Linda Van Speybroeck - 2009 - Acta Biotheoretica 58 (1):15-49.details
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FueL: Representing function structure and function dependencies with a UML profile for function modeling.Patryk Burek, Frank Loebe & Heinrich Herre - 2016 - Applied ontology 11 (2):155-203.details
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Genetic interaction analysis of point mutations enables interrogation of gene function at a residue‐level resolution.Hannes Braberg, Erica A. Moehle, Michael Shales, Christine Guthrie & Nevan J. Krogan - 2014 - Bioessays 36 (7):706-713.details
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Axiomatisation of general concept inclusions from finite interpretations.D. Borchmann, F. Distel & F. Kriegel - 2016 - Journal of Applied Non-Classical Logics 26 (1):1-46.details
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